Metal-organic frameworks (MOFs) offer great promise in a variety of gas- and liquid-phase separations. However, the excellent performance on the lab scale hardly translates into pilot- or industrial-scale applications due to the microcrystalline nature of MOFs. Therefore, the structuring of MOFs into pellets or beads is a highly solicited and timely requirement. In this work, a general structuring method is developed for preparing MOF-polymer composite beads based on an easy polymerization strategy. This method adopts biocompatible, biodegradable poly(acrylic acid) (PAA) and sodium alginate monomers, which are cross-linked using Ca2+ ions. Also, the preparation procedure employs water and hence is nontoxic. Moreover, the universal method has been applied to 12 different structurally diverse MOFs and three MOF-based composites. To validate the applicability of the structuring method, beads consisting of a MOF composite, namely Fe-BTC/PDA, were subsequently employed for the extraction of Pb and Pd ions from real-world water samples. For example, we find that just 1 g of Fe-BTC/PDA beads is able to decontaminate >10 L of freshwater containing highly toxic lead (Pb) concentrations of 600 ppb while under continuous flow. Moreover, the beads offer one of the highest Pd capacities to date, 498 mg of Pd per gram of composite bead. Furthermore, large quantities of Pd, 7.8 wt %, can be readily concentrated inside the bead while under continuous flow, and this value can be readily increased with regenerative cycling.