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research article

Automated Platform for Long-Term Culture and High-Content Phenotyping of Single C. elegans Worms

Atakan, H. B.
•
Xiang, R.
•
Cornaglia, M.
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October 4, 2019
Scientific Reports

The nematode Caenorhabditis elegans is a suitable model organism in drug screening. Traditionally worms are grown on agar plates, posing many challenges for long-term culture and phenotyping of animals under identical conditions. Microfluidics allows for 'personalized' phenotyping, as microfluidic chips permit collecting individual responses over worms' full life. Here, we present a multiplexed, high-throughput, high-resolution microfluidic approach to culture C. elegans from embryo to the adult stage at single animal resolution. We allocated single embryos to growth chambers, for observing the main embryonic and post-embryonic development stages and phenotypes, while exposing worms to up to 8 different well-controlled chemical conditions. Our approach allowed eliminating bacteria aggregation and biofilm formation-related clogging issues, which enabled us performing up to 80 hours of automated single worm culture studies. Our microfluidic platform is linked with an automated phenotyping code that registers organism-associated phenotypes at high-throughput. We validated our platform with a dose-response study of the anthelmintic drug tetramisole by studying its influence through the life cycle of the nematodes. In parallel, we could observe development effects and variations in single embryo and worm viability due to the bleaching procedure that is standardly used for harvesting the embryos from a worm culture agar plate.

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Type
research article
DOI
10.1038/s41598-019-50920-8
Web of Science ID

WOS:000489011300002

Author(s)
Atakan, H. B.
Xiang, R.
Cornaglia, M.
Mouchiroud, L.
Katsyuba, E.
Auwerx, J.  
Gijs, M. A. M.  
Date Issued

2019-10-04

Publisher

Nature Research

Published in
Scientific Reports
Volume

9

Article Number

14340

Subjects

Multidisciplinary Sciences

•

Science & Technology - Other Topics

•

caenorhabditis-elegans

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levamisole resistance

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high-resolution

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behavior

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model

•

system

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device

•

genes

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LMIS2  
LISP  
Available on Infoscience
October 19, 2019
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/162100
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