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research article

Persistence length and scaling properties of single-stranded DNA adsorbed on modified graphite

Rechendorff, Kristian
•
Witz, Guillaume  
•
Adamcik, Jozef  
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2009
The Journal of Chemical Physics

We have characterized the polymer physics of single-stranded DNA (ssDNA) using atomic force microscopy. The persistence length l(p) of circular ssDNA adsorbed on a modified graphite surface was determined independently of secondary structure. At a very low ionic strength we obtained l(p)=9.1 nm from the bond correlation function. Increasing the salt concentration lead to a decrease in l(p); at 1 mM NaCl we found l(p)=6.7 nm, while at 10 mM NaCl a value l(p)=4.6 nm was obtained. The persistence length was also extracted from the root-mean-square end-to-end distance and the end-to-end distance distribution function. Finally, we have investigated the scaling behavior using the two latter quantities, and found that on long length scales ssDNA behaves as a two-dimensional self-avoiding walk.

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Type
research article
DOI
10.1063/1.3216111
Web of Science ID

WOS:000269625400034

Author(s)
Rechendorff, Kristian
Witz, Guillaume  
Adamcik, Jozef  
Dietler, Giovanni  
Date Issued

2009

Published in
The Journal of Chemical Physics
Volume

131

Article Number

095103

Subjects

adsorption

•

atomic force microscopy

•

biological techniques

•

DNA

•

graphite

•

molecular biophysics

•

ATOMIC-FORCE MICROSCOPY

•

RADIAL-DISTRIBUTION FUNCTION

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SELF-AVOIDING WALK

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POLYMER-CHAIN

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2 DIMENSIONS

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MICA SURFACE

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MOLECULES

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FLEXIBILITY

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ADSORPTION

•

POLYELECTROLYTES

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LPMV  
Available on Infoscience
September 7, 2009
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/42468
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