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research article

The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools

Dreos, Ren
•
Ambrosini, Giovanna  
•
Perier, Rouayda Cavin
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2015
Nucleic Acids Research

We present an update of EPDNew (http://epd. vital-it. ch), a recently introduced new part of the Eukaryotic Promoter Database (EPD) which has been described in more detail in a previous NAR Database Issue. EPD is an old database of experimentally characterized eukaryotic POL II promoters, which are conceptually defined as transcription initiation sites or regions. EPDnew is a collection of automatically compiled, organism-specific promoter lists complementing the old corpus of manually compiled promoter entries of EPD. This new part is exclusively derived from next generation sequencing data from highthroughput promoter mapping experiments. We report on the recent growth of EPDnew, its extension to additional model organisms and its improved integration with other bioinformatics resources developed by our group, in particular the Signal Search Analysis and ChIP-Seq web servers.

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Type
research article
DOI
10.1093/nar/gku1111
Web of Science ID

WOS:000350210400015

PubMed ID

25378343

Author(s)
Dreos, Ren
Ambrosini, Giovanna  
Perier, Rouayda Cavin
Bucher, Philipp  
Date Issued

2015

Publisher

Oxford University Press

Published in
Nucleic Acids Research
Volume

43

Issue

D1

Start page

D92

End page

D96

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
GR-BUCHER  
Available on Infoscience
April 13, 2015
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/113270
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