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research article

A Mechanochemical Switch to Control Radical Intermediates

Brunk, Elizabeth  
•
Kellett, Whitney F.
•
Richards, Nigel G. J.
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2014
Biochemistry

B-12-dependent enzymes employ radical species with exceptional prowess to catalyze some of the most chemically challenging, thermodynamically unfavorable reactions. However, dealing with highly reactive intermediates is an extremely demanding task, requiring sophisticated control strategies to prevent unwanted side reactions. Using hybrid quantum mechanical/molecular mechanical simulations, we follow the full catalytic cycle of an AdoB(12)-dependent enzyme and present the details of a mechanism that utilizes a highly effective mechanochemical switch. When the switch is "off", the 5'-deoxyadenosyl radical moiety is stabilized by releasing the internal strain of an enzyme-imposed conformation. Turning the switch "on," the enzyme environment becomes the driving force to impose a distinct conformation of the 5'-deoxyadenosyl radical to avoid deleterious radical transfer. This mechanochemical switch illustrates the elaborate way in which enzymes attain selectivity of extremely chemically challenging reactions.

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Type
research article
DOI
10.1021/bi500050k
Web of Science ID

WOS:000337645600013

Author(s)
Brunk, Elizabeth  
Kellett, Whitney F.
Richards, Nigel G. J.
Rothlisberger, Ursula  
Date Issued

2014

Published in
Biochemistry
Volume

53

Issue

23

Start page

3830

End page

3838

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LCBC  
Available on Infoscience
August 29, 2014
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/106430
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