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  4. Multidimensional characterization of inducible promoters and a highly light-sensitive LOV-transcription factor
 
research article

Multidimensional characterization of inducible promoters and a highly light-sensitive LOV-transcription factor

Gligorovski, Vojislav  
•
Sadeghi, Ahmad
•
Rahi, Sahand Jamal  
June 27, 2023
Nature Communications

The ability to independently control the expression of different genes is important for quantitative biology. Using budding yeast, we characterize GAL1pr, GALL, MET3pr, CUP1pr, PHO5pr, tetOpr, terminator-tetOpr, Z(3)EV, blue-light inducible optogenetic systems El222-LIP, El222-GLIP, and red-light inducible PhyB-PIF3. We report kinetic parameters, noise scaling, impact on growth, and the fundamental leakiness of each system using an intuitive unit, maxGAL1. We uncover disadvantages of widely used tools, e.g., nonmonotonic activity of MET3pr and GALL, slow off kinetics of the doxycycline- and estradiol-inducible systems tetOpr and Z(3)EV, and high variability of PHO5pr and red-light activated PhyB-PIF3 system. We introduce two previously uncharacterized systems: strongLOV, a more light-sensitive El222 mutant, and ARG3pr, which is induced in the absence of arginine or presence of methionine. To demonstrate fine control over gene circuits, we experimentally tune the time between cell cycle Start and mitosis, artificially simulating near-wild-type timing. All strains, constructs, code, and data () are made available.

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Type
research article
DOI
10.1038/s41467-023-38959-8
Web of Science ID

WOS:001022863800012

Author(s)
Gligorovski, Vojislav  
Sadeghi, Ahmad
Rahi, Sahand Jamal  
Date Issued

2023-06-27

Publisher

Nature Portfolio

Published in
Nature Communications
Volume

14

Issue

1

Article Number

3810

Subjects

Multidisciplinary Sciences

•

Science & Technology - Other Topics

•

gene-expression system

•

saccharomyces-cerevisiae

•

fluorescent protein

•

arginine metabolism

•

positive feedback

•

g1 cyclins

•

yeast

•

activation

•

biosynthesis

•

repression

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LPBS  
Available on Infoscience
August 28, 2023
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/200092
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