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  4. Robust Biophysical Parameter Estimation with a Neural Network Enhanced Hamiltonian Markov Chain Monte Carlo Sampler
 
conference paper

Robust Biophysical Parameter Estimation with a Neural Network Enhanced Hamiltonian Markov Chain Monte Carlo Sampler

Yu, Thomas
•
Pizzolato, Marco  
•
Girard, Gabriel  
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2019
Information Processing In Medical Imaging, Ipmi 2019
IPMI 2019

Probabilistic parameter estimation in model fitting runs the gamut from maximum likelihood or maximum a posteriori point estimates from optimization to Markov Chain Monte Carlo (MCMC) sampling. The latter, while more computationally intensive, generally provides a better characterization of the underlying parameter distribution than that of point estimates. However, in order to efficiently explore distributions, MCMC methods ideally require generating uncorrelated samples while also preserving reasonable acceptance probabilities; this becomes particularly important in problematic regions of parameter space. In this paper, we extend a recently proposed Hamiltonian MCMC sampler parametrized by neural networks (L2HMC) by modifying the loss function to jointly optimize the distance between samples and the acceptance probability such that it is stable and efficient. We apply this enhanced sampler to parameter estimation in a recently proposed MRI model, the multi-echo spherical mean technique. We show that it generally outperforms the state of the art Hamiltonian No-U-Turn (NUTS) sampler, L2HMC, and a least squares fitting in terms of accuracy and precision, also enabling the generation of more informative parameter posterior distributions. This illustrates the potential of machine learning enhanced samplers for improving probabilistic parameter estimation for medical imaging applications.

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Type
conference paper
DOI
10.1007/978-3-030-20351-1_64
Web of Science ID

WOS:000493380900064

Author(s)
Yu, Thomas
Pizzolato, Marco  
Girard, Gabriel  
Patino Lopez, Jonathan Rafael  
Jorge Canales-Rodriguez, Erick
Thiran, Jean-Philippe  
Date Issued

2019

Publisher

SPRINGER INTERNATIONAL PUBLISHING AG

Publisher place

Cham

Published in
Information Processing In Medical Imaging, Ipmi 2019
Total of pages

12

Volume

11492

Start page

818

End page

829

Subjects

Markov Chain Monte Carlo

•

Hamiltonian MCMC Sampler

•

Magnetic Resonance Imaging

•

Optimization

•

Parameter Estimation.

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LTS5  
Event nameEvent placeEvent date
IPMI 2019

Hong Kong, Hong Kong

June 2-7 2019

Available on Infoscience
March 20, 2019
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/155661
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