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  4. Meshing of Spiny Neuronal Morphologies using Union Operators
 
conference paper

Meshing of Spiny Neuronal Morphologies using Union Operators

Abdellah, Marwan  
•
García Cantero, Juan José  
•
Foni, Alessandro Enrico  
Show more
Turner, M.
•
Vangorp, P.
2022
Eurographics Computer Graphics and Visual Computing (CGVC) conference proceedings (Graphics section)
The 40th Computer Graphics & Visual Computing Conference

Neurons are characterized by thin and long interleaving arborizations in which creating accurate mesh models of their cellular membranes is challenging. While union operators are central for CAD/CAM modeling and computer graphics applications, their applicability to neuronal mesh generation has not been explored. In this work, we present the results of exploring the effectiveness of using union operators to generate high fidelity surface meshes of spiny neurons from their morphological traces. To improve the visual realism of the resulting models, a plausible shape of the cell body is also realized with implicit surfaces (metaballs). The algorithm is implemented in Blender based on its Python API and is integrated into NeuroMorphoVis, a neuroscience-specific framework for visualization and analysis of neuronal morphologies. Our method is applied to a dataset consisting of more than 600 neurons representing 60 morphological types reconstructed from the neocortex of a juvenile rat. The performance of our implementation is quantitatively analyzed, and the results are qualitatively compared to previous implementation. The resulting meshes are applicable in multiple contexts including visualization and analysis of full compartmental simulations and generation of high quality multimedia content for scientific visualization and visual computing (Figure 1). Computer Graphics Marwan Abdellah, Juan José García Cantero, Alessandro Foni, Nadir Román Guerrero, Elvis Boci, and Felix Schürmann

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Type
conference paper
DOI
10.2312/cgvc.20221168
Author(s)
Abdellah, Marwan  
García Cantero, Juan José  
Foni, Alessandro Enrico  

EPFL

Roman Guerrero, Nadir  
Boci, Elvis  
Schürmann, Felix  
Editors
Turner, M.
•
Vangorp, P.
Date Issued

2022

Published in
Eurographics Computer Graphics and Visual Computing (CGVC) conference proceedings (Graphics section)
Published in
Computer Graphics and Visual Computing (CGVC)
Start page

19

End page

26

URL

Eurographics Digital Library

https://doi.org/10.2312/cgvc.20221168
Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
BBP-CORE  
Event nameEvent acronymEvent placeEvent date
The 40th Computer Graphics & Visual Computing Conference

CGVC 2022

Leeds, UK [virtual event]

2022-09-15 - 2022-09-16

Available on Infoscience
May 3, 2023
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/197268
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