Repository logo

Infoscience

  • English
  • French
Log In
Logo EPFL, École polytechnique fédérale de Lausanne

Infoscience

  • English
  • French
Log In
  1. Home
  2. Academic and Research Output
  3. Journal articles
  4. Single Neuron Optimization as a Basis for Accurate Biophysical Modeling : The Case of Cerebellar Granule Cells
 
research article

Single Neuron Optimization as a Basis for Accurate Biophysical Modeling : The Case of Cerebellar Granule Cells

Masoli, Stefano
•
Rizza, Martina F.
•
Sgritta, Martina
Show more
2017
Frontiers In Cellular Neuroscience

In realistic neuronal modeling, once the ionic channel complement has been defined, the maximum ionic conductance (Gi-max) values need to be tuned in order to match the firing pattern revealed by electrophysiological recordings. Recently, selection/mutation genetic algorithms have been proposed to efficiently and automatically tune these parameters. Nonetheless, since similar firing patterns can be achieved through different combinations of Gi-max values, it is not clear how well these algorithms approximate the corresponding properties of real cells. Here we have evaluated the issue by exploiting a unique opportunity offered by the cerebellar granule cell (GrC), which is electrotonically compact and has therefore allowed the direct experimental measurement of ionic currents. Previous models were constructed using empirical tuning of Gi-max values to match the original data set. Here, by using repetitive discharge patterns as a template, the optimization procedure yielded models that closely approximated the experimental Gi-max values. These models, in addition to repetitive firing, captured additional features, including inward rectification, near-threshold oscillations, and resonance, which were not used as features. Thus, parameter optimization using genetic algorithms provided an efficient modeling strategy for reconstructing the biophysical properties of neurons and for the subsequent reconstruction of large-scale neuronal network models.

  • Files
  • Details
  • Metrics
Type
research article
DOI
10.3389/fncel.2017.00071
Web of Science ID

WOS:000396199800001

Author(s)
Masoli, Stefano
Rizza, Martina F.
Sgritta, Martina
Van Geit, Werner
Schuermann, Felix  
D'Angelo, Egidio
Date Issued

2017

Publisher

Frontiers Media Sa

Published in
Frontiers In Cellular Neuroscience
Volume

11

Start page

71

Subjects

granule cell

•

cerebellum

•

modeling

•

optimization techniques

•

intrinsic electroresponsiveness

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
BBP-CORE  
Available on Infoscience
May 1, 2017
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/136830
Logo EPFL, École polytechnique fédérale de Lausanne
  • Contact
  • infoscience@epfl.ch

  • Follow us on Facebook
  • Follow us on Instagram
  • Follow us on LinkedIn
  • Follow us on X
  • Follow us on Youtube
AccessibilityLegal noticePrivacy policyCookie settingsEnd User AgreementGet helpFeedback

Infoscience is a service managed and provided by the Library and IT Services of EPFL. © EPFL, tous droits réservés