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  4. An automatic multi-tissue human fetal brain segmentation benchmark using the Fetal Tissue Annotation Dataset
 
research article

An automatic multi-tissue human fetal brain segmentation benchmark using the Fetal Tissue Annotation Dataset

Payette, Kelly
•
de Dumast, Priscille
•
Kebiri, Hamza
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July 6, 2021
Scientific Data

It is critical to quantitatively analyse the developing human fetal brain in order to fully understand neurodevelopment in both normal fetuses and those with congenital disorders. To facilitate this analysis, automatic multi-tissue fetal brain segmentation algorithms are needed, which in turn requires open datasets of segmented fetal brains. Here we introduce a publicly available dataset of 50 manually segmented pathological and non-pathological fetal magnetic resonance brain volume reconstructions across a range of gestational ages (20 to 33 weeks) into 7 different tissue categories (external cerebrospinal fluid, grey matter, white matter, ventricles, cerebellum, deep grey matter, brainstem/spinal cord). In addition, we quantitatively evaluate the accuracy of several automatic multi-tissue segmentation algorithms of the developing human fetal brain. Four research groups participated, submitting a total of 10 algorithms, demonstrating the benefits the dataset for the development of automatic algorithms.

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Type
research article
DOI
10.1038/s41597-021-00946-3
Web of Science ID

WOS:000670253700001

Author(s)
Payette, Kelly
de Dumast, Priscille
Kebiri, Hamza
Ezhov, Ivan
Paetzold, Johannes C.
Shit, Suprosanna
Iqbal, Asim  
Khan, Romesa
Kottke, Raimund
Grehten, Patrice
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Date Issued

2021-07-06

Publisher

NATURE RESEARCH

Published in
Scientific Data
Volume

8

Issue

1

Start page

167

Subjects

Multidisciplinary Sciences

•

Science & Technology - Other Topics

•

volume reconstruction

•

mri

•

atlas

•

shape

•

superresolution

•

intensity

•

images

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
UPMWMATHIS  
Available on Infoscience
July 31, 2021
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/180378
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