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  4. MATHICSE Technical Report : Improved hybrid/GPU algorithm for solving cardiac electro-physiology problems on Purkinje networks
 
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MATHICSE Technical Report : Improved hybrid/GPU algorithm for solving cardiac electro-physiology problems on Purkinje networks

Lange, M.
•
Palamara, S.
•
Lassila, Toni Mikael  
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February 17, 2016

The cardiac Purkinje fibres provide an important stimulus to the coordinated contraction of the heart. We present a numerical algorithm for the solution of electrophysiology problems on the Purkinje network that is efficient enough to be used on realistic networks with physiologically detailed membrane models. The algorithm is based on operator splitting and is provided with three different implementations: pure CPU, hybrid CPU/GPU, and pure GPU. Compared to our previous work based on the model of Vigmond et al., we modify the explicit gap junction term at network bifurcations in order to improve its mathematical consistency. Due to this improved consistency of the model, we are able to perform a convergence study against analytical solutions and verify that all three implementations produce equivalent convergence rates. Finally, we compare the efficiency of all three implementations on Purkinje networks of increasing spatial resolution using membrane models of increasing complexity. Both hybrid and pure-GPU implementations outperform the pure-CPU implementation, but their relative performance difference depends on the size of the Purkinje network and the complexity of the membrane model used. Copyright c 2015 John Wiley & Sons, Ltd.

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Type
working paper
DOI
10.5075/epfl-MATHICSE-271020
Author(s)
Lange, M.
Palamara, S.
Lassila, Toni Mikael  
Vergara, C.
Quarteroni, Alfio  
Frangi, A.F.
Corporate authors
MATHICSE-Group
Date Issued

2016-02-17

Publisher

MATHICSE

Subjects

electrophysiology

•

Purkinje networks

•

graphics processing units

•

hybrid algorithms

Note

MATHICSE Technical Report Nr. 07.2016

Written at

EPFL

EPFL units
CMCS  
Available on Infoscience
October 1, 2019
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/161757
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