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research article

PyNEST: a convenient interface to the NEST simulator

Eppler, Jochen Martin
•
Helias, Moritz
•
Muller, Eilif
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2008
Frontiers in Neuroinformatics

The neural simulation tool NEST (http://www.nest-initiative.org) is a simulator for heterogeneous networks of point neurons or neurons with a small number of compartments. It aims at simulations of large neural systems with more than 10^4 neurons and 10^7 to 10^9 synapses. NEST is implemented in C++ and can be used on a large range of architectures from single-core laptops over multi-core desktop computers to super-computers with thousands of processor cores. Python (http://www.python.org) is a modern programming language that has recently received considerable attention in Computational Neuroscience. Python is easy to learn and has many extension modules for scientific computing (e.g. http://www.scipy.org). In this contribution we describe PyNEST, the new user interface to NEST. PyNEST combines NEST’s efficient simulation kernel with the simplicity and flexibility of Python. Compared to NEST’s native simulation language SLI, PyNEST makes it easier to set up simulations, generate stimuli, and analyze simulation results. We describe how PyNEST connects NEST and Python and how it is implemented. With a number of examples, we illustrate how it is used.

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Type
research article
DOI
10.3389/neuro.11.012.2008
Author(s)
Eppler, Jochen Martin
Helias, Moritz
Muller, Eilif
Diesmann, Markus
Gewaltig, Marc-Oliver
Date Issued

2008

Publisher

Frontiers Research Foundation

Published in
Frontiers in Neuroinformatics
Volume

2

Issue

12

Start page

1

End page

12

Subjects

python

•

modelling

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integrate-and-fire neuron

•

large-scale simulation

•

scientific computing

•

networks

•

programming

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LCN  
Available on Infoscience
August 12, 2009
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/42050
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