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  4. Rites of passage: requirements and standards for building kinetic models of metabolic phenotypes
 
research article

Rites of passage: requirements and standards for building kinetic models of metabolic phenotypes

Miskovic, Ljubisa  
•
Tokic, Milenko  
•
Fengos, Georgios  
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2015
Current Opinion in Biotechnology

The overarching ambition of kinetic metabolic modeling is to capture the dynamic behavior of metabolism to such an extent that systems and synthetic biology strategies can reliably be tested in silico. The lack of kinetic data hampers the development of kinetic models, and most of the current models use ad hoc reduced stoichiometry or oversimplified kinetic rate expressions, which may limit their predictive strength. There is a need to introduce the community-level standards that will organize and accelerate the future developments in this area. We introduce here a set of requirements that will ensure the model quality, we examine the current kinetic models with respect to these requirements, and we propose a general workflow for constructing models that satisfy these requirements.

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Type
research article
DOI
10.1016/j.copbio.2015.08.019
Web of Science ID

WOS:000367116700019

Author(s)
Miskovic, Ljubisa  
Tokic, Milenko  
Fengos, Georgios  
Hatzimanikatis, Vassily  
Date Issued

2015

Publisher

Elsevier

Published in
Current Opinion in Biotechnology
Volume

36

Start page

146

End page

153

Subjects

kinetic models

•

metabolic engineering

•

synthetic biology

•

systems biology

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LCSB  
Available on Infoscience
September 3, 2015
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/117563
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