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research article

Multi-animal pose estimation, identification and tracking with DeepLabCut

Lauer, Jessy  
•
Zhou, Mu  
•
Ye, Shaokai  
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April 1, 2022
Nature Methods

Estimating the pose of multiple animals is a challenging computer vision problem: frequent interactions cause occlusions and complicate the association of detected keypoints to the correct individuals, as well as having highly similar looking animals that interact more closely than in typical multi-human scenarios. To take up this challenge, we build on DeepLabCut, an open-source pose estimation toolbox, and provide high-performance animal assembly and tracking-features required for multi-animal scenarios. Furthermore, we integrate the ability to predict an animal's identity to assist tracking (in case of occlusions). We illustrate the power of this framework with four datasets varying in complexity, which we release to serve as a benchmark for future algorithm development.

DeepLabCut is extended to enable multi-animal pose estimation, animal identification and tracking, thereby enabling the analysis of social behaviors.

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Type
research article
DOI
10.1038/s41592-022-01443-0
Web of Science ID

WOS:000782612700001

Author(s)
Lauer, Jessy  
Zhou, Mu  
Ye, Shaokai  
Menegas, William
Schneider, Steffen  
Nath, Tanmay
Rahman, Mohammed Mostafizur
Di Santo, Valentina
Soberanes, Daniel
Feng, Guoping
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Date Issued

2022-04-01

Publisher

NATURE PORTFOLIO

Published in
Nature Methods
Volume

19

Issue

4

Start page

496

End page

504

Subjects

Biochemical Research Methods

•

Biochemistry & Molecular Biology

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

Available on Infoscience
May 9, 2022
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/187744
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