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research article

Laser flash melting cryo-EM samples to overcome preferred orientation

Straub, Monique S.  
•
Harder, Oliver F.  
•
Mowry, Nathan J.  
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2025
Nature Methods

Sample preparation remains a bottleneck for protein structure determination by cryo-electron microscopy. A frequently encountered issue is that proteins adsorb to the air–water interface of the sample in a limited number of orientations. This makes it challenging to obtain high-resolution reconstructions, or may even cause projects to fail altogether. We have previously observed that laser flash melting and revitrification of cryo-EM samples reduces preferred orientation for large, symmetric particles. Here we demonstrate that our method can in fact be used to scramble the orientation of proteins of a range of sizes and symmetries. The effect can be enhanced for some proteins by increasing the heating rate during flash melting or by depositing amorphous ice onto the sample prior to revitrification. This also allows us to shed light onto the underlying mechanism. Our experiments establish a set of tools for overcoming preferred orientation that can be easily integrated into existing workflows.

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Type
research article
DOI
10.1038/s41592-025-02796-y
Scopus ID

2-s2.0-105014418142

Author(s)
Straub, Monique S.  

École Polytechnique Fédérale de Lausanne

Harder, Oliver F.  

École Polytechnique Fédérale de Lausanne

Mowry, Nathan J.  

École Polytechnique Fédérale de Lausanne

Barrass, Sarah V.  

École Polytechnique Fédérale de Lausanne

Hruby, Jakub  

École Polytechnique Fédérale de Lausanne

Drabbels, Marcel  

École Polytechnique Fédérale de Lausanne

Lorenz, Ulrich J.  

École Polytechnique Fédérale de Lausanne

Date Issued

2025

Published in
Nature Methods
Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LND  
LUXS  
FunderFunding(s)Grant NumberGrant URL

Swiss National Science Foundation

TMCG-2_213773

NIH

U54AI170752

Available on Infoscience
September 8, 2025
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/253838
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