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  4. An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values
 
conference paper

An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values

Alberti, Claudio  
•
Daniels, Noah
•
Hernaez, Mikel
Show more
2016
Proceedings of the Data Compression Conference
IEEE Data Compression Conference 2016

This paper provides the specification and an initial validation of an evaluation framework for the comparison of lossy compressors of genome sequencing quality values. The goal is to define reference data, test sets, tools and metrics that shall be used to evaluate the impact of lossy compression of quality values on human genome variant calling. The functionality of the framework is validated referring to two state-of-the-art genomic compressors. This work has been spurred by the current activity within the ISO/IEC SC29/WG11 technical committee (a.k.a. MPEG), which is investigating the possibility of starting a standardization activity for genomic information representation.

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Type
conference paper
DOI
10.1109/Dcc.2016.39
Web of Science ID

WOS:000391353800023

Author(s)
Alberti, Claudio  
Daniels, Noah
Hernaez, Mikel
Voges, Jan
Goldfeder, Rachel Lynn
Hernandez Lopez, Ana Angelica  
Mattavelli, Marco  
Berger, Bonnie
Date Issued

2016

Publisher

Ieee

Publisher place

New York

Published in
Proceedings of the Data Compression Conference
ISBN of the book

978-1-5090-1853-6

Total of pages

10

Series title/Series vol.

IEEE Data Compression Conference

Subjects

genome compression

•

lossy compression

URL

URL

https://www.researchgate.net/publication/303341758_An_Evaluation_Framework_for_Lossy_Compression_of_Genome_Sequencing_Quality_Values
Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
SCI-STI-MM  
Event nameEvent place
IEEE Data Compression Conference 2016

Snowbird, Utah, USA

Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/131724
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