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  4. Steerable filters for orientation estimation and localization of fluorescent dipoles
 
conference paper

Steerable filters for orientation estimation and localization of fluorescent dipoles

Aguet, François
•
Geissbühler, Stefan  
•
Märki, Iwan  
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2009
Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009
IEEE International Symposium on Biomedical Imaging: From Nano to Macro

Fluorescence localization microscopy (i.e., PALM, STORM) has enabled optical imaging at nanometer-scale resolutions. The localization algorithms used in these techniques rely on fitting a 2-D Gaussian to the in-focus image of individual fluorophores. For fixed fluorophores, however, the observed diffraction pattern depends on the orientation of the underlying molecular dipole and does not necessarily correspond to a section of the system's point spread function. By using a physically realistic image formation model for dipoles to perform the fit, both the position and orientation of the dipole can be estimated with high accuracy, improving upon Gaussian localization. In this paper, we present an algorithm for joint position and orientation estimation based on a 3-D steerable filter, and show that the results are near-optimal with respect to the Cramer-Rao bounds. We show that patterns generated using estimated positions and orientations closely fit experimental measurements.

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Type
conference paper
DOI
10.1109/ISBI.2009.5193265
Web of Science ID

WOS:000270678400297

Author(s)
Aguet, François
Geissbühler, Stefan  
Märki, Iwan  
Lasser, Theo  
Unser, Michael
Date Issued

2009

Publisher

Ieee Service Center, 445 Hoes Lane, Po Box 1331, Piscataway, Nj 08855-1331 Usa

Publisher place

Boston, MA

Published in
Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009
Issue

Article number 5193265

Start page

1166

End page

1169

Subjects

Fluorescence microscopy

•

Fluorescent dipoles

•

Localization

•

Steerable filters

•

Superresolution

URL

URL

http://www.biomedicalimaging.org/
Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LOB  
LIB  
Event nameEvent placeEvent date
IEEE International Symposium on Biomedical Imaging: From Nano to Macro

Boston, Massachusetts

June 28 - July 1, 2009

Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/44587
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