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  4. Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software
 
research article

Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software

Sage, Daniel  
•
Thanh-An Pham  
•
Babcock, Hazen
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May 1, 2019
Nature Methods

With the widespread uptake of two-dimensional (2D) and three-dimensional (3D) single-molecule localization microscopy (SMLM), a large set of different data analysis packages have been developed to generate super-resolution images. In a large community effort, we designed a competition to extensively characterize and rank the performance of 2D and 3D SMLM software packages. We generated realistic simulated datasets for popular imaging modalities-2D, astigmatic 3D, biplane 3D and double-helix 3D-and evaluated 36 participant packages against these data. This provides the first broad assessment of 3D SMLM software and provides a holistic view of how the latest 2D and 3D SMLM packages perform in realistic conditions. This resource allows researchers to identify optimal analytical software for their experiments, allows 3D SMLM software developers to benchmark new software against the current state of the art, and provides insight into the current limits of the field.

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Type
research article
DOI
10.1038/s41592-019-0364-4
Web of Science ID

WOS:000466430000019

Author(s)
Sage, Daniel  
Thanh-An Pham  
Babcock, Hazen
Lukes, Tomas  
Pengo, Thomas  
Chao, Jerry
Velmurugan, Ramraj
Herbert, Alex
Agrawal, Anurag
Colabrese, Silvia
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Date Issued

2019-05-01

Published in
Nature Methods
Volume

16

Issue

5

Start page

387

End page

395

Subjects

Biochemical Research Methods

•

Biochemistry & Molecular Biology

•

diffraction-limit

•

reconstruction

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

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LIB  
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Available on Infoscience
June 18, 2019
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/158121
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