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research article

The Role and Perspective of Ab Initio Molecular Dynamics in the Study of Biological Systems

Carloni, Paolo
•
Rothlisberger, Ursula  
•
Parrinello, Michele
2002
Accounts of Chemical Research

A review. Ab initio mol. dynamics (MD) allows realistic simulations to be performed without adjustable parameters. In recent years, the technique has been used on an increasing no. of applications to biochem. systems. Here we describe the principles on which ab initio MD is based. We focus on the most popular implementation, based on d. functional theory and plane wave basis set. By a survey of recent applications, we show that despite the current limitations of size and time scale, ab initio MD (and hybrid ab initio MD/MM approaches) can play an important role for the modeling of biol. systems. Finally, we provide a perspective for the advancement of methodol. approaches which may further expand the scope of ab initio MD in biomol. modeling. [on SciFinder (R)]

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Type
research article
DOI
10.1021/ar010018u
Author(s)
Carloni, Paolo
•
Rothlisberger, Ursula  
•
Parrinello, Michele
Date Issued

2002

Published in
Accounts of Chemical Research
Volume

35

Issue

6

Start page

455

End page

464

Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LCBC  
Available on Infoscience
February 27, 2006
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/226171
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