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research article

Scalable maximal subgraph mining with backbone-preserving graph convolutions

Nguyen, Thanh Toan
•
Huynh, Thanh Trung  
•
Weidlich, Matthias
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June 12, 2023
Information Sciences

Maximal subgraph mining is increasingly important in various domains, including bioinformatics, genomics, and chemistry, as it helps identify common characteristics among a set of graphs and enables their classification into different categories. Existing approaches for identifying maximal subgraphs typically rely on traversing a graph lattice. However, in practice, these approaches are limited to relatively small subgraphs due to the exponential growth of the search space and the NP-completeness of the underlying subgraph isomorphism test. In this work, we propose SCAMA, an approach that addresses these limitations by adopting a divide-and-conquer strategy for efficient mining of maximal subgraphs. Our approach involves initially partitioning a graph database into equivalence classes using bootstrapped backbones, which are tree-shaped frequent subgraphs. We then introduce a learning process based on a novel graph convolutional network (GCN) to extract maximal backbones for each equivalence class. A critical insight of our approach is that by estimating each maximal backbone directly in the embedding space, we can avoid the exponential traversal of the graph lattice. From the extracted maximal backbones, we construct the maximal frequent subgraphs. Furthermore, we outline how SCAMA can be extended to perform top-������ largest frequent subgraph mining and how the discovered patterns facilitate graph classification. Our experimental results demonstrate the effectiveness of SCAMA in identifying almost perfectly maximal frequent subgraphs, while exhibiting approximately 10 times faster performance compared to the best baseline technique.

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Type
research article
DOI
10.1016/j.ins.2023.119287
Web of Science ID

WOS:001026704800001

Author(s)
Nguyen, Thanh Toan
•
Huynh, Thanh Trung  
•
Weidlich, Matthias
•
Tho, Quan Thanh
•
Yin, Hongzhi
•
Aberer, Karl  
•
Nguyen, Quoc Viet Hung  
Date Issued

2023-06-12

Publisher

ELSEVIER SCIENCE INC

Published in
Information Sciences
Volume

644

Article Number

119287

Subjects

Computer Science, Information Systems

•

Computer Science

•

maximal subgraph mining

•

graph embedding

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graph convolutional networks

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scalable approximation

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rumor detection

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network

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efficient

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LSIR  
Available on Infoscience
July 31, 2023
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/199553
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