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research article

GCN2 adapts protein synthesis to scavenging-dependent growth

Nofal, Michel
•
Wang, Tim
•
Yang, Lifeng
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February 16, 2022
Cell Systems

Pancreatic cancer cells with limited access to free amino acids can grow by scavenging extracellular protein. In a murine model of pancreatic cancer, we performed a genome-wide CRISPR screen for genes required for scavenging-dependent growth. The screen identified key mediators of macropinocytosis, peripheral lysosome positioning, endosome-lysosome fusion, lysosomal protein catabolism, and translational control. The top hit was GCN2, a kinase that suppresses translation initiation upon amino acid depletion. Using isotope tracers, we show that GCN2 is not required for protein scavenging. Instead, GCN2 prevents ribosome stalling but without slowing protein synthesis; cells still use all of the limiting amino acids as they emerge from lysosomes. GCN2 also adapts gene expression to the nutrient-poor environment, reorienting protein synthesis away from ribosomes and toward lysosomal hydrolases, such as cathepsin L. GCN2, cathepsin L, and the other genes identified in the screen are potential therapeutic targets in pancreatic cancer.

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Type
research article
DOI
10.1016/j.cels.2021.09.014
Web of Science ID

WOS:000759156600003

Author(s)
Nofal, Michel
Wang, Tim
Yang, Lifeng
Jankowski, Connor S. R.
Li, Sophia Hsin-Jung  
Han, Seunghun
Parsons, Lance
Frese, Alexander N.
Gitai, Zemer
Anthony, Tracy G.
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Date Issued

2022-02-16

Published in
Cell Systems
Volume

13

Issue

2

Start page

158

End page
Subjects

Biochemistry & Molecular Biology

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Cell Biology

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Biochemistry & Molecular Biology

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Cell Biology

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translation initiation

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quantitative proteomics

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transfer-rna

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kinase gcn2

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complex

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activation

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macropinocytosis

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fibroblasts

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sequence

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myo9b

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
UPPERSAT  
Available on Infoscience
March 14, 2022
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/186400
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