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  4. An Introduction to MPEG-G: The First Open ISO/IEC Standard for the Compression and Exchange of Genomic Sequencing Data
 
research article

An Introduction to MPEG-G: The First Open ISO/IEC Standard for the Compression and Exchange of Genomic Sequencing Data

Voges, Jan
•
Hernaez, Mikel
•
Mattavelli, Marco  
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September 1, 2021
Proceedings of the IEEE

The development and progress of high-throughput sequencing technologies have transformed the sequencing of DNA from a scientific research challenge to practice. With the release of the latest generation of sequencing machines, the cost of sequencing a whole human genome has dropped to less than $600. Such achievements open the door to personalized medicine, where it is expected that genomic information of patients will be analyzed as a standard practice. However, the associated costs, related to storing, transmitting, and processing the large volumes of data, are already comparable to the costs of sequencing. To support the design of new and interoperable solutions for the representation, compression, and management of genomic sequencing data, the Moving Picture Experts Group (MPEG) jointly with working group 5 of ISO/TC276 "Biotechnology" has started to produce the ISO/IEC 23092 series, known as MPEG-G. MPEG-G does not only offer higher levels of compression compared with the state of the art but it also provides new functionalities, such as built-in support for random access in the compressed domain, support for data protection mechanisms, flexible storage, and streaming capabilities. MPEG-G only specifies the decoding syntax of compressed bitstreams, as well as a file format and a transport format. This allows for the development of new encoding solutions with higher degrees of optimization while maintaining compatibility with any existing MPEG-G decoder.

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Type
research article
DOI
10.1109/JPROC.2021.3082027
Web of Science ID

WOS:000686767200015

Author(s)
Voges, Jan
Hernaez, Mikel
Mattavelli, Marco  
Ostermann, Joern
Date Issued

2021-09-01

Publisher

IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC

Published in
Proceedings of the IEEE
Volume

109

Issue

9

Start page

1607

End page

1622

Subjects

Engineering, Electrical & Electronic

•

Engineering

•

bioinformatics

•

computational biology

•

data compression

•

dna

•

genomics

•

standardization

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quality score compression

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adaptive framework

•

algorithm

•

reads

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
SCI-STI-MM  
Available on Infoscience
September 25, 2021
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/181708
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