Repository logo

Infoscience

  • English
  • French
Log In
Logo EPFL, École polytechnique fédérale de Lausanne

Infoscience

  • English
  • French
Log In
  1. Home
  2. Academic and Research Output
  3. Books and Book parts
  4. REX technologies for profiling and decoding the electrophile signaling axes mediated by Rosetta Stone proteins
 
book part or chapter

REX technologies for profiling and decoding the electrophile signaling axes mediated by Rosetta Stone proteins

Long, Marcus J. C.
•
Urul, Daniel A.
•
Aye, Yimon  
January 1, 2020
Chemical And Synthetic Biology Approaches To Understand Cellular Functions - Pt C

It is now clear that some cysteines on some proteins are highly tuned to react with electrophiles. Based on numerous studies, it is also established that electrophile sensing underpins rewiring of several critical signaling processes. These electrophile-sensing proteins, or privileged first responders (PFRs), are likely critically relevant for drug design. However, identifying PFRs remains a challenging and unsolved problem, despite the development of several high-throughput methods to ID proteins that react with electrophiles. More importantly, we remain unable to rank how different PFRs identified under different conditions relate to one another, in terms of sensing or signaling capacity. Here we evaluate different methods to assay sensing functions of proteins and discuss these methods in the context of developing a "ranking scheme." Based on theoretical and experimental evidence, we propose that T-REX-the only targeted-electrophile delivery tool presently available-is a reliable method to rank PFRs. Finally, we address to what extent electrophile sensing and downstream signaling are correlated. Based on our current data, we observe that such behaviors are indeed correlated. It is our hope that through this manuscript researchers from various arms of the stress signaling fields will focus on developing a quantitative understanding of precision electrophile labeling.

  • Details
  • Metrics
Type
book part or chapter
DOI
10.1016/bs.mie.2019.02.039
Web of Science ID

WOS:000556282100012

Author(s)
Long, Marcus J. C.
Urul, Daniel A.
Aye, Yimon  
Date Issued

2020-01-01

Publisher

ACADEMIC PRESS LTD-ELSEVIER SCIENCE LTD

Publisher place

London

Published in
Chemical And Synthetic Biology Approaches To Understand Cellular Functions - Pt C
ISBN of the book

978-0-12-819128-6

Start page

203

End page

230

Series title/Series vol.

Methods in Enzymology; 633

Subjects

Biochemical Research Methods

•

Biochemistry & Molecular Biology

•

Cell Biology

•

Biochemistry & Molecular Biology

•

Cell Biology

•

cross-linking

•

redox

•

metabolism

•

keap1

•

ros

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LEAGO  
Available on Infoscience
August 19, 2020
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/170926
Logo EPFL, École polytechnique fédérale de Lausanne
  • Contact
  • infoscience@epfl.ch

  • Follow us on Facebook
  • Follow us on Instagram
  • Follow us on LinkedIn
  • Follow us on X
  • Follow us on Youtube
AccessibilityLegal noticePrivacy policyCookie settingsEnd User AgreementGet helpFeedback

Infoscience is a service managed and provided by the Library and IT Services of EPFL. © EPFL, tous droits réservés