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research article
SPar-K: a method to partition NGS signal data
November 1, 2019
We present SPar-K (Signal Partitioning with K-means), a method to search for archetypical chromatin architectures by partitioning a set of genomic regions characterized by chromatin signal profiles around ChIP-seq peaks and other kinds of functional sites. This method efficiently deals with problems of data heterogeneity, limited misalignment of anchor points and unknown orientation of asymmetric patterns.
Type
research article
Web of Science ID
WOS:000499323900041
Authors
Publication date
2019-11-01
Publisher
Published in
Volume
35
Issue
21
Start page
4440
End page
4441
Peer reviewed
REVIEWED
EPFL units
Available on Infoscience
December 12, 2019
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