Analysis of photosensor frontends for biomedical applications: a focus on noise

Photosensing has proven to be highly useful in biomedical research and medical care. Being able to detect and quantify the light emitted by fluorescent or bioluminescent reporters has significantly participated in the development of new cancer treatments and made possible the development of cost-effective diagnosis techniques. While these advances relied on the large CCD devices or on laboratory-on-chips, the design of a bioluminescence-based implant for the continuous monitoring of biological data can be considered and would allow for the acquisition of insightful information in both research and care. To exist, such an implant requires a suited photosensing circuit, the design of which can be challenging due to the weakness of the target bioluminescent signal. This thesis addresses the design and evaluation of an appropriate analog-to-digital converter (ADC), with a focus on its expected accuracy. In particular, three integration-base current-to-frequency converters are considered: the current-controlled oscillator, the first-order Sigma-Delta converter with instantaneous feedback, the first-order Sigma-Delta converter with continuous feedback. Theoretical formulas are established to assess how the input-referred noise would impact the results from such ADCs, depending on the integration time as well as the time passed since last calibration. In addition to the general case, specific formulas are provided for white noise, flicker noise, and Lorentzian-shaped noise. Moreover, in practical cases that are conceivable with target application, these formulas cannot be used as they are due to the finite resolution of computing softwares. Consequently, the related implementation issues are addressed and solved. To guide the design of the current-to-frequency converters, how each of their imperfections affects their accuracy is analyzed in depth. This analysis and the obtained formulas serve a top-level-focused design strategy that is argued for in this thesis. It relies on maintaining a detailed top-level description of the system under study to help focus the designing efforts on the most impactful areas as well as guide the design choices at the transistor level. Applying such a strategy is made possible by the development of a MATLAB tool providing a flexible graphic user interface to explore the impact of each parameter of the design. In addition, to further assist the design of the ADC and/or of the photodetector, a Python tool is presented to explore configurations for successive simulations and data analyses, even when using multiple softwares. As an opening chapter, emphasizing the importance of considering the top-level in design, the case of heart rate monitoring through photoplethysmography is addressed. In this case, the highest level of the system includes the data processing, and only the latter can actually allow for drastic improvements of the power consumption by alleviating the requirements on the data acquisition. In fact, it is demonstrated that in many situations, the sampling frequency for the acquisition of the plethysmograph could be brought down to 10 to 25 Hz, while still ensuring a satisfying accuracy for the heart rate and heart rate variation monitoring.


Advisor(s):
Kayal, Maher
Koukab, Adil
Year:
2019
Publisher:
Lausanne, EPFL
Keywords:
Laboratories:
GR-KA


Note: The status of this file is: EPFL only


 Record created 2019-06-19, last modified 2019-07-09

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