PWMScan: a fast tool for scanning entire genomes with a position-specific weight matrix

Transcription factors (TFs) regulate gene expression by binding to specific short DNA sequences of 5 to 20-bp to regulate the rate of transcription of genetic information from DNA to messenger RNA. We present PWMScan, a fast web-based tool to scan server-resident genomes for matches to a user-supplied PWM or TF binding site model from a public database.


Publié dans:
Bioinformatics, bty127
Année
Mar 05 2018
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 Notice créée le 2018-03-06, modifiée le 2019-03-17

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