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research article

Mapping the function of neuronal ion channels in model and experiment

Podlaski, William F.
•
Seeholzer, Alexander
•
Groschner, Lukas N.
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2017
Elife

Ion channel models are the building blocks of computational neuron models. Their biological fidelity is therefore crucial for the interpretation of simulations. However, the number of published models, and the lack of standardization, make the comparison of ion channel models with one another and with experimental data difficult. Here, we present a framework for the automated large-scale classification of ion channel models. Using annotated metadata and responses to a set of voltage-clamp protocols, we assigned 2378 models of voltage- and calcium-gated ion channels coded in NEURON to 211 clusters. The IonChannelGenealogy (ICGenealogy) web interface provides an interactive resource for the categorization of new and existing models and experimental recordings. It enables quantitative comparisons of simulated and/or measured ion channel kinetics, and facilitates field-wide standardization of experimentally-constrained modeling.

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Type
research article
DOI
10.7554/eLife.22152
Web of Science ID

WOS:000396110100001

Author(s)
Podlaski, William F.
Seeholzer, Alexander
Groschner, Lukas N.
Miesenbock, Gero
Ranjan, Rajnish  
Vogels, Tim P.
Date Issued

2017

Publisher

Elife Sciences Publications Ltd

Published in
Elife
Volume

6

Article Number

e22152

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LCN  
BBP-CORE  
Available on Infoscience
May 1, 2017
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/136844
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