SIMToolbox: a MATLAB toolbox for structured illumination fluorescence microscopy

SIMToolbox is an open-source, modular set of functions for MATLAB equipped with a user-friendly graphical interface and designed for processing two-dimensional and three-dimensional data acquired by structured illumination microscopy (SIM). Both optical sectioning and super-resolution applications are supported. The software is also capable of maximum a posteriori probability image estimation (MAP-SIM), an alternative method for reconstruction of structured illumination images. MAP-SIM can potentially reduce reconstruction artifacts, which commonly occur due to refractive index mismatch within the sample and to imperfections in the illumination.


Published in:
Bioinformatics, 32, 2, 318-320
Year:
2016
Publisher:
Oxford, Oxford University Press
ISSN:
1367-4803
Laboratories:




 Record created 2016-02-16, last modified 2018-09-13


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