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  4. Orthogonal Filtered Recoupled-STOCSY to Extract Metabolic Networks Associated with Minor Perturbations from NMR Spectroscopy
 
research article

Orthogonal Filtered Recoupled-STOCSY to Extract Metabolic Networks Associated with Minor Perturbations from NMR Spectroscopy

Blaise, Benjamin J.
•
Navratil, Vincent
•
Emsley, Lyndon  
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2011
JOURNAL OF PROTEOME RESEARCH

Supervised multivariate statistical analyses of NMR spectroscopic data sets are often required to identify metabolic differences between sample classes, and 20 the use of orthogonal filters has proven to be highly efficient even when dealing with weak perturbations. In this note, we associate orthogonal filters to the recently reported recoupled-statistical total correlation spectroscopy (RSTOCSY). An initial supervised deflation of the spectral matrix is applied to remove all information orthogonal to the effect of interest and is followed by an RSTOCSY analysis to extract a list of pairs of metabolites that experience correlated perturbations. This list can then be used to find possibilities for the perturbed metabolic network. This supervised RSTOCSY approach, dubbed OR-STOCSY, yields metabolites related to perturbations of biological interest, even if they make a minor contribution to the global variance of a complex data set compared to other (possibly confounding) effects under study. The method is demonstrated with the application to genetic phenotypes in Caenorhabditis elegans.

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Type
research article
DOI
10.1021/pr200489n
Web of Science ID

WOS:000294446600043

Author(s)
Blaise, Benjamin J.
Navratil, Vincent
Emsley, Lyndon  
Toulhoat, Pierre
Date Issued

2011

Publisher

AMER CHEMICAL SOC

Published in
JOURNAL OF PROTEOME RESEARCH
Volume

10

Issue

9

Start page

4342

End page

4348

Subjects

metabonomics

•

STOCSY

•

SRV

•

metabolic network

•

OSC filter

•

NMR

•

correlation matrix

Editorial or Peer reviewed

REVIEWED

Written at

OTHER

EPFL units
LRM  
Available on Infoscience
January 8, 2015
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/110004
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