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research article

Atomic-Resolution Structural Dynamics in Crystalline Proteins from NMR and Molecular Simulation

Mollica, Luca
•
Baias, Maria
•
Lewandowski, Jozef R.
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2012
The Journal of Physical Chemistry Letters

Solid-state NMR can provide atomic-resolution information about protein motions occurring on a vast range of time scales under similar conditions to those of Xray diffraction studies and therefore offers a highly complementary approach to characterizing the dynamic fluctuations occurring in the crystal. We compare experimentally determined dynamic parameters, spin relaxation, chemical shifts, and dipolar couplings, to values calculated from a 200 ns MD simulation of protein GB1 in its crystalline form, providing insight into the nature of structural dynamics occurring within the crystalline lattice. This simulation allows us to test the accuracy of commonly applied procedures for the interpretation of experimental solid-state relaxation data in terms of dynamic modes and time scales. We discover that the potential complexity of relaxation-active motion can lead to significant under- or overestimation of dynamic amplitudes if different components are not taken into consideration.

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Type
research article
DOI
10.1021/jz3016233
Web of Science ID

WOS:000312170600044

Author(s)
Mollica, Luca
Baias, Maria
Lewandowski, Jozef R.
Wylie, Benjamin J.
Sperling, Lindsay J.
Rienstra, Chad M.
Emsley, Lyndon  
Blackledge, Martin
Date Issued

2012

Publisher

AMER CHEMICAL SOC

Published in
The Journal of Physical Chemistry Letters
Volume

3

Issue

23

Start page

3657

End page

3662

Editorial or Peer reviewed

REVIEWED

Written at

OTHER

EPFL units
LRM  
Available on Infoscience
January 8, 2015
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/109981
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