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research article

Spline-Based Deforming Ellipsoids for Interactive 3D Bioimage Segmentation

Delgado-Gonzalo, Ricard
•
Chenouard, Nicolas
•
Unser, Michael  
2013
IEEE Transactions on Image Processing

We present a new fast active-contour model (a.k.a. snake) for image segmentation in 3D microscopy. We introduce a parametric design that relies on exponential B-spline bases and allows us to build snakes that are able to reproduce ellipsoids. We design our bases to have the shortest-possible support, subject to some constraints. Thus, computational efficiency is maximized. The proposed 3D snake can approximate blob-like objects with good accuracy and can perfectly reproduce spheres and ellipsoids, irrespective of their position and orientation. The optimization process is remarkably fast due to the use of Gauss' theorem within our energy computation scheme. Our technique yields successful segmentation results, even for challenging data where object contours are not well defined. This is due to our parametric approach that allows one to favor prior shapes. In addition, this paper provides a software that gives full control over the snakes via an intuitive manipulation of few control points.

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Type
research article
DOI
10.1109/Tip.2013.2264680
Web of Science ID

WOS:000324385200016

Author(s)
Delgado-Gonzalo, Ricard
•
Chenouard, Nicolas
•
Unser, Michael  
Date Issued

2013

Publisher

Ieee-Inst Electrical Electronics Engineers Inc

Published in
IEEE Transactions on Image Processing
Volume

22

Issue

10

Start page

3926

End page

3940

Subjects

Active contour

•

active surface

•

parametric snake

•

exponential B-spline

•

segmentation

•

parameterization

•

microscopy

•

3D

•

sphere

•

ellipsoid

URL

URL

http://bigwww.epfl.ch/publications/delgadogonzalo1303.html

URL

http://bigwww.epfl.ch/publications/delgadogonzalo1303.pdf

URL

http://bigwww.epfl.ch/publications/delgadogonzalo1303.ps
Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LIB  
Available on Infoscience
November 4, 2013
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/96597
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