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  4. Time Scales of Slow Motions in Ubiquitin Explored by Heteronuclear Double Resonance
 
research article

Time Scales of Slow Motions in Ubiquitin Explored by Heteronuclear Double Resonance

Salvi, Nicola  
•
Ulzega, Simone  
•
Ferrage, Fabien
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2012
Journal of the American Chemical Society

Understanding how proteins function at the atomic level relies in part on a detailed characterization of their dynamics. Ubiquitin, a small single-domain protein, displays rich dynamic properties over a wide range of time scales. In particular, several regions of ubiquitin show the signature of chemical exchange, including the hydrophobic patch and the beta 4-alpha 2 loop, which are both involved in many interactions. Here, we use multiple-quantum relaxation techniques to identify the extent of chemical exchange in ubiquitin. We employ our recently developed heteronuclear double resonance method to determine the time scales of motions that give rise to chemical exchange. Dispersion profiles are obtained for the backbone NHN pairs of several residues in the hydrophobic patch and the beta 4-alpha 2 loop, as well as the C-terminus of helix alpha 1. We show that a single time scale (ca. 50 mu s) can be used to fit the data for most residues. Potential mechanisms for the propagation of motions and the possible extent of correlation of these motions are discussed.

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Type
research article
DOI
10.1021/ja210238g
Web of Science ID

WOS:000300460600009

Author(s)
Salvi, Nicola  
Ulzega, Simone  
Ferrage, Fabien
Bodenhausen, Geoffrey  
Date Issued

2012

Published in
Journal of the American Chemical Society
Volume

134

Issue

5

Start page

2481

End page

2484

Subjects

Model-Free Analysis

•

Protein Dynamics

•

Correlated Dynamics

•

Quantum Coherences

•

Dipolar Couplings

•

Binding Domains

•

Chemical-Shifts

•

Nmr Relaxation

•

Zero-Quantum

•

N-15 Nmr

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LRMB  
Available on Infoscience
February 8, 2012
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/77603
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