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  4. A New Genomic Evolutionary Model for Rearrangements, Duplications, and Losses that Applies across Eukaryotes and Prokaryotes
 
conference paper

A New Genomic Evolutionary Model for Rearrangements, Duplications, and Losses that Applies across Eukaryotes and Prokaryotes

Lin, Yu  
•
Moret, Bernard M. E.  
2010
Proceedings of the 8th RECOMB Workshop on Comparative Genomics RECOMB-CG 2010
RECOMB Workshop on Comparative Genomics RECOMB-CG'10

Genomic rearrangements have been studied since the beginnings of modern genetics and models for such rearrangements have been the subject of many papers over the last 10 years. However, none of the extant models can predict the evolution of genomic organization into circular unichromosomal genomes (as in most prokaryotes) and linear multichromosomal genomes (as in most eukaryotes). Very few of these models support gene duplications and losses-yet these events may be more common in evolutionary history than rearrangements and themselves cause apparent rearrangements. We propose a new evolutionary model that integrates gene duplications and losses with genome rearrangements and that leads to genomes with either one (or a very few) circular chromosome or a collection of linear chromosomes. Our model is based on existing rearrangement models and inherits their linear-time algorithms for pairwise distance computation (for rearrangement only). Moreover, our model predictions fit observations about the evolution of gene family sizes and agree with the existing predictions about the growth in the number of chromosomes in eukaryotic genomes.

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Type
conference paper
DOI
10.1007/978-3-642-16181-0
Web of Science ID

WOS:000294813000004

Author(s)
Lin, Yu  
Moret, Bernard M. E.  
Date Issued

2010

Publisher

Springer Verlag New York

Published in
Proceedings of the 8th RECOMB Workshop on Comparative Genomics RECOMB-CG 2010
Series title/Series vol.

Lecture Notes in Bioinformatics; 6398

Start page

228

End page

239

Subjects

algorithms

•

combinatorial optimization

•

computational molecular biology

•

genomic rearrangements

•

Karyotype Evolution

•

Family

•

Permutations

•

Chromosomes

•

Drosophila

•

Inversion

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LCBB  
Event name
RECOMB Workshop on Comparative Genomics RECOMB-CG'10
Available on Infoscience
December 16, 2011
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/74643
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