Repository logo

Infoscience

  • English
  • French
Log In
Logo EPFL, École polytechnique fédérale de Lausanne

Infoscience

  • English
  • French
Log In
  1. Home
  2. Academic and Research Output
  3. Journal articles
  4. Accurate and Fast Simulation of Channel Noise in Conductance-Based Model Neurons by Diffusion Approximation
 
research article

Accurate and Fast Simulation of Channel Noise in Conductance-Based Model Neurons by Diffusion Approximation

Linaro, Daniele
•
Storace, Marco
•
Giugliano, Michele
2011
PLoS Computational Biology

Stochastic channel gating is the major source of intrinsic neuronal noise whose functional consequences at the microcircuit- and network-levels have been only partly explored. A systematic study of this channel noise in large ensembles of biophysically detailed model neurons calls for the availability of fast numerical methods. In fact, exact techniques employ the microscopic simulation of the random opening and closing of individual ion channels, usually based on Markov models, whose computational loads are prohibitive for next generation massive computer models of the brain. In this work, we operatively define a procedure for translating any Markov model describing voltage-or ligand-gated membrane ion-conductances into an effective stochastic version, whose computer simulation is efficient, without compromising accuracy. Our approximation is based on an improved Langevin-like approach, which employs stochastic differential equations and no Montecarlo methods. As opposed to an earlier proposal recently debated in the literature, our approximation reproduces accurately the statistical properties of the exact microscopic simulations, under a variety of conditions, from spontaneous to evoked response features. In addition, our method is not restricted to the Hodgkin-Huxley sodium and potassium currents and is general for a variety of voltage-and ligand-gated ion currents. As a by-product, the analysis of the properties emerging in exact Markov schemes by standard probability calculus enables us for the first time to analytically identify the sources of inaccuracy of the previous proposal, while providing solid ground for its modification and improvement we present here.

  • Details
  • Metrics
Type
research article
DOI
10.1371/journal.pcbi.1001102
Web of Science ID

WOS:000288995500010

Author(s)
Linaro, Daniele
Storace, Marco
Giugliano, Michele
Date Issued

2011

Published in
PLoS Computational Biology
Volume

7

Issue

3

Article Number

e1001102

Subjects

Subthreshold Voltage Noise

•

Hodgkin-Huxley Equations

•

Single-Channel

•

Electrical-Stimulation

•

Neocortical Neurons

•

Action-Potentials

•

Auditory-Nerve

•

Ion Channels

•

Fluctuations

•

Reliability

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
BMI  
Available on Infoscience
December 16, 2011
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/74256
Logo EPFL, École polytechnique fédérale de Lausanne
  • Contact
  • infoscience@epfl.ch

  • Follow us on Facebook
  • Follow us on Instagram
  • Follow us on LinkedIn
  • Follow us on X
  • Follow us on Youtube
AccessibilityLegal noticePrivacy policyCookie settingsEnd User AgreementGet helpFeedback

Infoscience is a service managed and provided by the Library and IT Services of EPFL. © EPFL, tous droits réservés