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research article

Freezing immunoglobulins to see them move

Fanelli, D.
•
Piazza, F.
•
De los Rios, P.  
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2004
Proceedings Of The National Academy Of Sciences Of The United States Of America (PNAS)

The issue of protein dynamics and its implications in the biological function of proteins are arousing greater and greater interest in different fields of molecular biology. In cryo-electron tomography experiments one may take several snapshots of a given biological macromolecule. In principle, a large enough collection of snapshots of the molecule may then be used to calculate its equilibrium configuration in terms of the experimentally accessible degrees of freedom and, hence, to estimate its potential energy. This information would be crucial in order to analyze the biological functions of biomolecules by directly accessing the relevant dynamical indicators. In this article, we analyze the results of cryo-electron tomography experiments performed on monoclonal murine IgG2a antibodies. We measure the equilibrium distribution of the molecule in terms of the relevant angular coordinates and build a mechanical model of the antibody dynamics. This approach enables us to derive an explicit expression of the IgG potential energy. Furthermore, we discuss the configuration space at equilibrium in relation to results from other techniques, and we set our discussion in the context of the current debate regarding conformation and flexibility of antibodies.

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Type
research article
DOI
10.1073/pnas.0400119101
Web of Science ID

WOS:000221107900027

Author(s)
Fanelli, D.
Piazza, F.
De los Rios, P.  
Sandin, S.
Skoglund, U.
Bongini, L.
Date Issued

2004

Publisher

National Academy of Sciences

Published in
Proceedings Of The National Academy Of Sciences Of The United States Of America (PNAS)
Volume

101

Start page

6466

End page

6471

Subjects

Electron-Microscope Tomography

•

Intact Monoclonal-Antibodies

•

3-Dimensional Reconstruction

•

Tilt Series

•

Igg

•

Projections

•

Micrographs

•

Dynamics

•

Molecule

•

Water

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LBS  
Available on Infoscience
March 22, 2010
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/48358
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