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research article

Fractal dimension and localization of DNA knots

Ercolini, Erika
•
Valle, Francesco
•
Adamcik, Jozef
Show more
2007
Physical Review Letters

The scaling properties of DNA knots of different complexities were studied by atomic force microscope. Following two different protocols DNA knots are adsorbed onto a mica surface in regimes of (i) strong binding, that induces a kinetic trapping of the three-dimensional (3D) configuration, and of (ii) weak binding, that permits (partial) relaxation on the surface. In (i) the radius of gyration of the adsorbed DNA knot scales with the 3D Flory exponent nu = 0.60 within error. In (ii), we find nu approximate to 0.66, a value between the 3D and 2D (nu = 3/4) exponents. Evidence is also presented for the localization of knot crossings in 2D under weak adsorption conditions.

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Type
research article
DOI
10.1103/PhysRevLett.98.058102
Web of Science ID

WOS:000244646100078

Author(s)
Ercolini, Erika
Valle, Francesco
Adamcik, Jozef
Witz, Guillaume
Metzler, Ralf
De Los Rios, Paolo  
Roca, Joaquim
Dietler, Giovanni
Date Issued

2007

Publisher

American Physical Society

Published in
Physical Review Letters
Volume

98

Article Number

058102

Subjects

Atomic-Force Microscopy

•

Escherichia-Coli

•

Polymers

•

Catenanes

•

Polygons

•

Capsids

•

Length

•

Loose

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LBS  
Available on Infoscience
March 16, 2010
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/48217
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