The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems
The OPEP coarse-grained protein model has been applied to a wide range of applications since its first release 15 years ago. The model, which combines energetic and structural accuracy and chemical specificity, allows the study of single protein properties, DNA-RNA complexes, amyloid fibril formation and protein suspensions in a crowded environment. Here we first review the current state of the model and the most exciting applications using advanced conformational sampling methods. We then present the current limitations and a perspective on the ongoing developments.
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Sterpone, F., Melchionna, S., Tuffery, P., Pasquali, S., Mousseau, N., Cragnolini, T., Chebaro, Y., St-Pierre, J.-F., Kalimeri, M., Barducci, A., Laurin, Y., Tek, A., Baaden, M., Phuong, H. N., & Derreumaux, P. (2014). [Review of The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems]. Chemical Society Reviews, 43(13), 4871–4893. https://doi.org/10.1039/c4cs00048j
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WOS:000337131200025
2014
43
13
4871
4893
REVIEWED
EPFL