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  4. Insights into excited-state and isomerization dynamics of bacteriorhodopsin from ultrafast transient UV absorption
 
research article

Insights into excited-state and isomerization dynamics of bacteriorhodopsin from ultrafast transient UV absorption

Schenkl, S.
•
van Mourik, F.  
•
Friedman, N.
Show more
2006
Proceedings Of The National Academy Of Sciences Of The United States Of America (PNAS)

A visible-pump/UV-probe transient absorption is used to characterize the ultrafast dynamics of bacteriorhodopsin with 80-fs time resoln. We identify three spectral components in the 265- to 310-nm region, related to the all-trans retinal, tryptophan (Trp)-86 and the isomerized photoproduct, allowing us to map the dynamics from reactants to products, along with the response of Trp amino acids. The signal of the photoproduct appears with a time delay of ~250 fs and is characterized by a steep rise (~150 fs), followed by addnl. rise and decay components, with time scales characteristic of the J intermediate. The delayed onset and the steep rise point to an impulsive formation of a transition state on the way to isomerization. We argue that this impulsive formation results from a splitting of a wave packet of torsional modes on the potential surface at the branching between the all-trans and the cis forms. Parallel to these dynamics, the signal caused by Trp response rises in ~200 fs, because of the translocation of charge along the conjugate chain, and possible mechanisms are presented, which trigger isomerization. [on SciFinder (R)]

  • Details
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Type
research article
DOI
10.1073/pnas.0506303103
Web of Science ID

WOS:000236429300032

Author(s)
Schenkl, S.
van Mourik, F.  
Friedman, N.
Sheves, M.
Schlesinger, R.
Haacke, S.
Chergui, M.  
Date Issued

2006

Publisher

National Academy of Sciences

Published in
Proceedings Of The National Academy Of Sciences Of The United States Of America (PNAS)
Volume

103

Issue

11

Start page

4101

End page

4106

Subjects

Transition state structure (Trp86 response mirrors change in permanent dipole moment of retinal after excitation in bacteriorhodopsin); Isomerization (insights into excited-state and isomerization dynamics of bacteriorhodopsin from ultrafast transient UV absorption); Bacteriorhodopsins Role: BSU (Biological study

•

unclassified)

•

PRP (Properties)

•

BIOL (Biological study) (insights into excited-state and isomerization dynamics of bacteriorhodopsin from ultrafast transient UV absorption); Conformation (protein; Trp86 response mirrors change in permanent dipole moment of retinal after excitation in bacteriorhodopsin)

•

isomerization bacteriorhodopsin conformation

Note

CAN 144:345475

6-3

General Biochemistry

Laboratoire de Spectroscopie Ultrarapide, Institut des Sciences et Ingenierie Chimiques, Faculte des Sciences de Base,Ecole Polytechnique Federale de Lausanne,Lausanne-Dorigny,Switz.

Journal

written in English.

73-22-3 (L-Tryptophan); 116-31-4 (all-trans-Retinal) Role: BSU (Biological study, unclassified), PRP (Properties), BIOL (Biological study) (Trp86 response mirrors change in permanent dipole moment of retinal after excitation in bacteriorhodopsin)

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LSU  
Available on Infoscience
May 31, 2007
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/7504
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