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research article

Topologically based multipolar reconstruction of electrostatic interactions in multiscale simulations of proteins

Cascella, Michele  
•
Neri, Marilisa A.
•
Carloni, Paolo
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2008
Journal of Chemical Theory and Computation

We present a new method to incorporate electrostatic interactions in coarse-grained representations of proteins. The model is based on a topologically reconstructed multipolar expansion of the all-atom centers of charge, specifically of the backbone dipoles and the polar or charged side chains. The reliability of the model is checked by studying different test cases, namely protein−cofactor/substrate interactions, protein large conformational changes, and protein−protein complexes. In all cases, the model quantitatively reproduces the all-atom electrostatic field in both a static and a dynamic framework. The model is of general applicability and can be used to improve both full coarse-grained simulations and hybrid all-atom/coarse-grained multiscale approaches.

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Type
research article
DOI
10.1021/ct800122x
Web of Science ID

WOS:000258400600023

Author(s)
Cascella, Michele  
Neri, Marilisa A.
Carloni, Paolo
Dal Peraro, Matteo  
Date Issued

2008

Published in
Journal of Chemical Theory and Computation
Volume

4

Issue

8

Start page

1378

End page

1385

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
UPDALPE  
Available on Infoscience
November 16, 2008
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/31187
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