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research article

A Molecular Spring for Vision

Roehrig, Ute F.  
•
Guidoni, Leonardo  
•
Laio, Alessandro
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2004
Journal of the American Chemical Society

Light absorption by the visual pigment rhodopsin leads to vision via a complex signal transduction pathway that is initiated by the ultrafast and highly efficient photoreaction of its chromophore, the retinal protonated Schiff base (RPSB). Here, we investigate this reaction in real time by means of unrestrained mol. dynamics simulations of the protein in a membrane mimetic environment, treating the chromophore at the d. functional theory level. We demonstrate that a highly strained all-trans RPSB is formed starting from the 11-cis configuration (dark state) within .apprx.100 fs by a minor rearrangement of the nuclei under preservation of the saltbridge with Glu113 and virtually no deformation of the binding pocket. Hence, the initial step of vision can be understood as the compression of a mol. spring by a minor change of the nuclear coordinates. This spring can then release its strain by altering the protein environment. [on SciFinder (R)]

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Type
research article
DOI
10.1021/ja048265r
Web of Science ID

WOS:000225349800005

Author(s)
Roehrig, Ute F.  
Guidoni, Leonardo  
Laio, Alessandro
Frank, Irmgard
Rothlisberger, Ursula  
Date Issued

2004

Published in
Journal of the American Chemical Society
Volume

126

Issue

47

Start page

15328

End page

15329

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LCBC  
Available on Infoscience
February 27, 2006
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/226217
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