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  4. Systematic analysis of CDR contacts and sequence constraints between T cell receptor <i>αβ</i> chains
 
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Systematic analysis of CDR contacts and sequence constraints between T cell receptor αβ chains

Milighetti, Martina
•
Nagano, Yuta
•
Henderson, James
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May 29, 2024

The six complementarity determining regions (CDRs) of the T cell receptor (TCR) form multiple contacts with cognate peptide and major histocompatibility complex, thus determining antigen specificity. However, the contacts between the CDRs themselves are less understood. We perform a systematic study of all available TCR structures, and identify consistent patterns of intra- and inter-chain CDR contacts. We further show that the sequences of paired TCRαand TCRβare not independent within sets of antigen-specific TCRs, for most epitopes. We quantify this sequence restriction using a mutual information framework. Co-evolution models can achieve somede novoprediction of TCRα/TCRβpairing, without using a training set of known pairs. The conserved pattern of CDR amino acid contacts, and the mutual sequence constraints between antigen-specific sets of T cell receptorαandβchains could play an important role in shaping the antigen-specific T cell repertoire.

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2024.05.24.595718v2.full.pdf

Type

Main Document

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openaccess

License Condition

CC BY

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14.89 MB

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Adobe PDF

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f108c14d92b2781a2f52fe5a0ee8ba84

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