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  4. A field-capable rapid plant DNA extraction protocol using microneedle patches for botanical surveying and monitoring
 
research article

A field-capable rapid plant DNA extraction protocol using microneedle patches for botanical surveying and monitoring

Selz, Jonathan  
•
Adam, Nicolas R.
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Magrini, Celine E. M.
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June 14, 2023
Applications In Plant Sciences

PremiseA novel protocol for rapid plant DNA extraction using microneedles is proposed, which supports botanic surveys, taxonomy, and systematics. This protocol can be conducted in the field with limited laboratory skills and equipment. The protocol is validated by sequencing and comparing the results with QIAGEN spin-column DNA extractions using BLAST analyses. Methods and ResultsTwo sets of DNA extractions were conducted on 13 species spanning various leaf anatomies and phylogenetic lineages: (i) fresh leaves were punched with custom polymeric microneedle patches to recover genomic DNA, or (ii) QIAGEN DNA extractions. Three plastid (matK, rbcL, and trnH-psbA) and one nuclear ribosomal (ITS) DNA regions were amplified and sequenced using Sanger or nanopore technology. The proposed method reduced the extraction time to 1 min and yielded the same DNA sequences as the QIAGEN extractions. ConclusionsOur drastically faster and simpler method is compatible with nanopore sequencing and is suitable for multiple applications, including high-throughput DNA-based species identifications and monitoring.

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Type
research article
DOI
10.1002/aps3.11529
Web of Science ID

WOS:001005885000001

Author(s)
Selz, Jonathan  
Adam, Nicolas R.
Magrini, Celine E. M.
Montandon, Fulvia Malvido
Buerki, Sven
Maerkl, Sebastian J.  
Date Issued

2023-06-14

Publisher

WILEY

Published in
Applications In Plant Sciences
Subjects

Plant Sciences

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dna extraction

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field

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microneedles

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plant

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rapid

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sequencing

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primers

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matk

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LBNC  
Available on Infoscience
July 3, 2023
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/198687
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