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research article

Water-Assisted Reaction Mechanism of Monozinc b-Lactamases

Dal Peraro, Matteo  
•
Llarrull, Leticia I.
•
Rothlisberger, Ursula  
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2004
Journal of the American Chemical Society

Hybrid Car-Parrinello QM/MM calcns. are used to investigate the reaction mechanism of hydrolysis of a common b-lactam substrate (cefotaxime) by the monozinc b-lactamase from Bacillus cereus (BcII). The calcns. suggest a fundamental role for an active site water in the catalytic mechanism. This water mol. binds the zinc ion in the first step of the reaction, expanding the zinc coordination no. and providing a proton donor adequately oriented for the second step. The free energy barriers of the two reaction steps are similar and consistent with the available exptl. data. The conserved hydrogen bond network in the active site, defined by Asp-120, Cys-221, and His-263, not only contributes to orient the nucleophile (as already proposed), but it also guides the second catalytic water mol. to the zinc ion after the substrate is bound. The hydrolysis reaction in water has a relatively high free energy barrier, which is consistent with the stability of cefotaxime in water soln. The modeled Michaelis complexes for other substrates are also characterized by the presence of an ordered water mol. in the same position, suggesting that this mechanism might be general for the hydrolysis of different b-lactam substrates. [on SciFinder (R)]

  • Details
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Type
research article
DOI
10.1021/ja048071b
Web of Science ID

WOS:000224219900087

Author(s)
Dal Peraro, Matteo  
Llarrull, Leticia I.
Rothlisberger, Ursula  
Vila, Alejandro J.
Carloni, Paolo
Date Issued

2004

Published in
Journal of the American Chemical Society
Volume

126

Issue

39

Start page

12661

End page

12668

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
UPDALPE  
LCBC  
Available on Infoscience
February 27, 2006
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/226205
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