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research article

Local conformational dynamics in alpha-helices measured by fast triplet transfer

Fierz, Beat  
•
Reiner, Andreas
•
Kiefhaber, Thomas
2009
Proceedings Of The National Academy Of Sciences Of The United States Of America (PNAS)

Coupling fast triplet-triplet energy transfer (TTET) between xanthone and naphthylalanine to the helix-coil equilibrium in alanine-based peptides allowed the observation of local equilibrium fluctuations in alpha-helices on the nanoseconds to microseconds time scale. The experiments revealed faster helix unfolding in the terminal regions compared with the central parts of the helix with time constants varying from 250 ns to 1.4 micros at 5 degrees C. Local helix formation occurs with a time constant of approximately 400 ns, independent of the position in the helix. Comparing the experimental data with simulations using a kinetic Ising model showed that the experimentally observed dynamics can be explained by a 1-dimensional boundary diffusion with position-independent elementary time constants of approximately 50 ns for the addition and of approximately 65 ns for the removal of an alpha-helical segment. The elementary time constant for helix growth agrees well with previously measured time constants for formation of short loops in unfolded polypeptide chains, suggesting that helix elongation is mainly limited by a conformational search.

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Type
research article
DOI
10.1073/pnas.0808581106
Author(s)
Fierz, Beat  
Reiner, Andreas
Kiefhaber, Thomas
Date Issued

2009

Published in
Proceedings Of The National Academy Of Sciences Of The United States Of America (PNAS)
Volume

106

Issue

4

Start page

1057

End page

62

Subjects

Energy Transfer

Editorial or Peer reviewed

REVIEWED

Written at

OTHER

EPFL units
LCBM  
Available on Infoscience
October 15, 2012
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/86102
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