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  4. A comparative study of galactose oxidase and active site analogs based on QM/MM Car-Parrinello simulations
 
research article

A comparative study of galactose oxidase and active site analogs based on QM/MM Car-Parrinello simulations

Rothlisberger, Ursula  
•
Carloni, Paolo
•
Doclo, Karel
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2000
Journal of Biological Inorganic Chemistry

A parallel study of the radical copper enzyme galactose oxidase (GOase) and a low mol. wt. analog of the active site was performed with dynamic d. functional and mixed quantum-classical calcns. This combined approach enables a direct comparison of the properties of the biomimetic and the natural systems throughout the course of the catalytic reaction. In both cases, five essential forms of the catalytic cycle have been investigated: the resting state in its semi-reduced (catalytically inactive) and its oxidized (catalytically active) form, Asemi and Aox, resp.; a protonated intermediate B; the transition state for the rate-detg. hydrogen abstraction step C, and its product D. For A and B the electronic properties of the biomimetic compd. are qual. very similar to the ones of the natural target. However, in agreement with the exptl. obsd. difference in catalytic activity, the calcd. activation energy for the hydrogen abstraction step is distinctly lower for GOase (16 kcal/mol) than for the mimetic compd. (21 kcal/mol). The enzymic transition state is stabilized by a delocalization of the unpaired spin d. over the sulfur-modified equatorial tyrosine Tyr272, an effect that for geometric reasons is essentially absent in the biomimetic compd. Further differences between the mimic and its natural target concern the structure of the product of the abstraction step, which is characterized by a weakly coordinated aldehyde complex for the latter and a tightly bound linear complex for the former. [on SciFinder (R)]

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Type
research article
DOI
10.1007/s007750050368
Author(s)
Rothlisberger, Ursula  
Carloni, Paolo
Doclo, Karel
Parrinello, Michele
Date Issued

2000

Published in
Journal of Biological Inorganic Chemistry
Volume

5

Issue

2

Start page

236

End page

250

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LCBC  
Available on Infoscience
February 27, 2006
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/226157
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