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  4. Improved reproducibility of γ-aminobutyric acid measurement from short-echo-time proton MR spectroscopy by linewidth-matched basis sets in LCModel
 
research article

Improved reproducibility of γ-aminobutyric acid measurement from short-echo-time proton MR spectroscopy by linewidth-matched basis sets in LCModel

Xiao, Ying  
•
Lanz, Bernard  
•
Lim, Song-, I  
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October 15, 2023
Nmr In Biomedicine

gamma-Aminobutyric acid (GABA), as the primary inhibitory neurotransmitter, is extremely important for maintaining healthy brain function, and deviations from GABA homeostasis are related to various brain diseases. Short-echo-time (short-TE) proton MR spectroscopy (H-1-MRS) has been employed to measure GABA concentration from various human brain regions at high magnetic fields. The aim of this study was to investigate the effect of spectral linewidth on GABA quantification and explore the application of an optimized basis-set preparation approach using a spectral-linewidth-matched (LM) basis set in LCModel to improve the reproducibility of GABA quantification from short-TE H-1-MRS. In contrast to the fixed-linewidth basis-set approach, the LM basis-set preparation approach, where all metabolite basis spectra were simulated with a linewidth 4 Hz narrower than that of water, showed a smaller standard deviation of estimated GABA concentration from synthetic spectra with varying linewidths and lineshapes. The test-retest reproducibility was assessed by the mean within-subject coefficient of variation, which improved from 19.2% to 12.0% in the thalamus, from 27.9% to 14.9% in the motor cortex, and from 9.7% to 2.8% in the medial prefrontal cortex using LM basis sets at 7 T. We conclude that spectral linewidth has a large effect on GABA quantification from short-TE H-1-MRS data and that using LM basis sets in LCModel can improve the reproducibility of GABA quantification.

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Type
research article
DOI
10.1002/nbm.5056
Web of Science ID

WOS:001085525300001

Author(s)
Xiao, Ying  
Lanz, Bernard  
Lim, Song-, I  
Tkac, Ivan
Xin, Lijing  
Date Issued

2023-10-15

Publisher

Wiley

Published in
Nmr In Biomedicine
Volume

37

Issue

2

Subjects

Life Sciences & Biomedicine

•

Technology

•

Basis Set

•

Gaba

•

Lcmodel

•

Reproducibility

•

Short-Te Proton Mrs

•

Spectral Linewidth

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
LIFMET  
FunderGrant Number

Swiss National Science Foundation

320030_189064

US National Institutes of Health

P30 NS076408

Swiss National Science Foundation (SNF)

320030_189064

Available on Infoscience
February 16, 2024
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/203887
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