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research article

Optimal radial basis for density-based atomic representations

Goscinski, Alexander  
•
Musil, Felix  
•
Pozdnyakov, Sergey  
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September 14, 2021
Journal Of Chemical Physics

The input of almost every machine learning algorithm targeting the properties of matter at the atomic scale involves a transformation of the list of Cartesian atomic coordinates into a more symmetric representation. Many of the most popular representations can be seen as an expansion of the symmetrized correlations of the atom density and differ mainly by the choice of basis. Considerable effort has been dedicated to the optimization of the basis set, typically driven by heuristic considerations on the behavior of the regression target. Here, we take a different, unsupervised viewpoint, aiming to determine the basis that encodes in the most compact way possible the structural information that is relevant for the dataset at hand. For each training dataset and number of basis functions, one can build a unique basis that is optimal in this sense and can be computed at no additional cost with respect to the primitive basis by approximating it with splines. We demonstrate that this construction yields representations that are accurate and computationally efficient, particularly when working with representations that correspond to high-body order correlations. We present examples that involve both molecular and condensed-phase machine-learning models.

  • Details
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Type
research article
DOI
10.1063/5.0057229
Web of Science ID

WOS:000698780100001

Author(s)
Goscinski, Alexander  
Musil, Felix  
Pozdnyakov, Sergey  
Nigam, Jigyasa  
Ceriotti, Michele  
Date Issued

2021-09-14

Published in
Journal Of Chemical Physics
Volume

155

Issue

10

Article Number

e104106

Subjects

Chemistry, Physical

•

Physics, Atomic, Molecular & Chemical

•

Chemistry

•

Physics

•

potential-energy surfaces

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
COSMO  
FunderGrant Number

FNS

200021-182057

Available on Infoscience
October 9, 2021
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/181936
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