Repository logo

Infoscience

  • English
  • French
Log In
Logo EPFL, École polytechnique fédérale de Lausanne

Infoscience

  • English
  • French
Log In
  1. Home
  2. Academic and Research Output
  3. Journal articles
  4. CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting
 
research article

CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting

Graham, Simon
•
Vu, Quoc Dang
•
Jahanifar, Mostafa
Show more
December 28, 2023
Medical Image Analysis

Nuclear detection, segmentation and morphometric profiling are essential in helping us further understand the relationship between histology and patient outcome. To drive innovation in this area, we setup a communitywide challenge using the largest available dataset of its kind to assess nuclear segmentation and cellular composition. Our challenge, named CoNIC, stimulated the development of reproducible algorithms for cellular recognition with real-time result inspection on public leaderboards. We conducted an extensive post -challenge analysis based on the top -performing models using 1,658 whole -slide images of colon tissue. With around 700 million detected nuclei per model, associated features were used for dysplasia grading and survival analysis, where we demonstrated that the challenge's improvement over the previous state-of-the-art led to significant boosts in downstream performance. Our findings also suggest that eosinophils and neutrophils play an important role in the tumour microevironment. We release challenge models and WSI-level results to foster the development of further methods for biomarker discovery.

  • Details
  • Metrics
Type
research article
DOI
10.1016/j.media.2023.103047
Web of Science ID

WOS:001156788800001

Author(s)
Graham, Simon
Vu, Quoc Dang
Jahanifar, Mostafa
Weigert, Martin  
Schmidt, Uwe
Zhang, Wenhua
Zhang, Jun
Yang, Sen
Xiang, Jinxi
Wang, Xiyue
Show more
Corporate authors
CoNIC Challenge Consortium
Date Issued

2023-12-28

Publisher

Elsevier

Published in
Medical Image Analysis
Volume

92

Article Number

103047

Subjects

Technology

•

Life Sciences & Biomedicine

•

Computational Pathology

•

Nuclear Recognition

•

Deep Learning

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
GR-WEIGERT  
FunderGrant Number

PathLAKE digital pathology consortium - Data to Early Diagnosis and Precision Medicine strand of the government's Industrial Strategy Challenge Fund

EPSRC, United Kingdom

EP/W02909X/1

Available on Infoscience
February 23, 2024
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/205496
Logo EPFL, École polytechnique fédérale de Lausanne
  • Contact
  • infoscience@epfl.ch

  • Follow us on Facebook
  • Follow us on Instagram
  • Follow us on LinkedIn
  • Follow us on X
  • Follow us on Youtube
AccessibilityLegal noticePrivacy policyCookie settingsEnd User AgreementGet helpFeedback

Infoscience is a service managed and provided by the Library and IT Services of EPFL. © EPFL, tous droits réservés