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research article

A Laplace mixture model for the identification of differential expression in microarrays

Bhowmick, D.
•
Davison, A. C.  
•
Goldstein, D. R.  
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2006
Biostatistics

Microarrays have become an important tool for studying the molecular basis of complex disease traits and fundamental biological processes. A common purpose of microarray experiments is the detection of genes that are differentially expressed under two conditions, such as treatment versus control or wild type versus knockout. We introduce a Laplace mixture model as a long-tailed alternative to the normal distribution when identifying differentially expressed genes in microarray experiments, and provide an extension to asymmetric over- or underexpression. This model permits greater flexibility than models in current use as it has the potential, at least with sufficient data, to accommodate both whole genome and restricted coverage arrays. We also propose likelihood approaches to hyperparameter estimation which are equally applicable in the Normal mixture case. The Laplace model appears to give some improvement in fit to data, though simulation studies show that our method performs similarly to several other statistical approaches to the problem of identification of differential expression.

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Type
research article
DOI
10.1093/biostatistics/kxj032
Author(s)
Bhowmick, D.
Davison, A. C.  
Goldstein, D. R.  
Ruffieux, Y.
Date Issued

2006

Published in
Biostatistics
Volume

7

Issue

4

Start page

630

End page

641

URL

URL

http://biostatistics.oxfordjournals.org/cgi/content/abstract/7/4/630
Editorial or Peer reviewed

REVIEWED

Written at

EPFL

EPFL units
STAT  
Available on Infoscience
April 21, 2006
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/229913
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