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  4. The Microstructural Features of the Diffusion-Simulated Connectivity (DiSCo) Dataset
 
conference paper

The Microstructural Features of the Diffusion-Simulated Connectivity (DiSCo) Dataset

Rafael-Patino, Jonathan  
•
Girard, Gabriel  
•
Truffet, Raphael
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January 1, 2021
Computational Diffusion Mri, Cdmri 2021
12th International Workshop on Computational Diffusion MRI (CDMRI)

We present a detailed description of the structural characteristics of the MICCAI 2021 Diffusion Simulated Connectivity (DiSCo) Challenge synthetic dataset. The DiSCo dataset are one of a kind numerical phantoms for the simulation of the diffusion-weighted images (DWIs) via Monte-Carlo diffusion simulations. The microscopic and macroscopic complexity of the synthetic substrates allows the evaluation of processing pipelines for the estimation of the quantitative structural connectivity. The diffusion-weighted signal in each voxel of the DWIs is obtained from Monte-Carlo simulations of particle dynamics within a substrate of an unprecedented size of 1 mm(3), allowing for an image matrix size up to 40 x 40 x 40 voxels (isotropic voxel sizes of 25 mu m). In this paper, we provide a characterization of the microstructural properties of the DiSCo dataset, which is composed of three numerical phantoms with comparable microstructure. We report the ground-truth tissue volume fractions ("intra-axonal", "extra-axonal", "myelin"), the fibre density, the bundle density and the fibre orientation distributions (FODs). We believe that this characterization will be beneficial for validating quantitative structural connectivity processing pipelines, and that could eventually find use in microstructural modelling based on machine learning approaches.

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Type
conference paper
DOI
10.1007/978-3-030-87615-9_14
Web of Science ID

WOS:000791040400014

Author(s)
Rafael-Patino, Jonathan  
Girard, Gabriel  
Truffet, Raphael
Pizzolato, Marco  
Thiran, Jean-Philippe  
Caruyer, Emmanuel
Date Issued

2021-01-01

Publisher

SPRINGER INTERNATIONAL PUBLISHING AG

Publisher place

Cham

Published in
Computational Diffusion Mri, Cdmri 2021
ISBN of the book

978-3-030-87615-9

978-3-030-87614-2

Series title/Series vol.

Lecture Notes in Computer Science; 13006

Start page

159

End page

170

Subjects

Computer Science, Software Engineering

•

Computer Science, Theory & Methods

•

Computer Science

•

monte-carlo simulations

•

dw-mri

•

phantoms

•

tractography

•

microstructure

•

mri

•

density

Editorial or Peer reviewed

REVIEWED

Written at

EPFL

Event nameEvent placeEvent date
12th International Workshop on Computational Diffusion MRI (CDMRI)

ELECTR NETWORK

Oct 01, 2021

Available on Infoscience
May 23, 2022
Use this identifier to reference this record
https://infoscience.epfl.ch/handle/20.500.14299/188113
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